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Max Planck Institute for Molecular Biomedicine, Münster, Germany

Epigenomics analysis of mono-allelic gene expression

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juan vaquerizasjuan vaquerizas group

Mono-allelic gene expression is a molecular phenomenon by which gene products are produced from a single allele in each cell. This has been shown to be a crucial aspect of the epigenetics regulation of different biological systems such as X chromosome inactivation in mammalian females, or the regulation of pluripotency in stem cells. We are interested in investigating mono-allelic gene expression in pathogens, where it plays a key role during the infection process. To do so, we employ high-throughput genome-wide techniques, such as ChIP-seq or RNA-seq, to examine chromatin and gene expression changes that occur in the pathogen¹s genome over the course of an infection. Our goal in doing these experiments is to understand the molecular mechanisms that control mono-allelic gene expression and how they are regulated, which, in turn, will help us suggest new therapeutic approaches to treat these infections.

People involved:

  • Rocio Enriquez-Gasca, PhD student
  • Anna-Wiebke Meyer, research assistant

Latest publications

Dual randomization of oligonucleotides to reduce the bias in ribosome-profiling libraries.

27450428 - 2016-07-28
Methods 2016 Jul 19;
Lecanda A, Nilges BS, Sharma P, Nedialkova DD, Schwarz J, Vaquerizas JM, Leidel SA

TADtool: Visual Parameter Identification for TAD-calling Algorithms.

27318199 - 2016-06-19
Bioinformatics 2016 Jun 17;
Kruse K, Hug CB, Hernández-Rodríguez B, Vaquerizas JM

Early embryonic-like cells are induced by downregulating replication-dependent chromatin assembly.

26237512 - 2015-08-04
Nat Struct Mol Biol 2015 Aug 3;
Ishiuchi T, Enriquez-Gasca R, Mizutani E, Bošković A, Ziegler-Birling C, Rodriguez-Terrones D, Wakayama T, Vaquerizas JM, Torres-Padilla ME

View all their publications

News flash

Missing link in epigenetics could explain conundrum of disease inheritance

08-07-2016 - All News

The process by which a mother’s diet during pregnancy can permanently affect her offspring’s attributes, such as weight, could be strongly influenced by genetic variation in an unexpected part of...

Epigenetic switch for obesity

08-02-2016 - All News

Obesity can sometimes be shut down It is well known that a predisposition to adiposity lies in our genes. A new study by researchers at the Max Planck Institute of Immunobiology...