Advancing Epigenetics Towards Systems Biology

List of EpiGeneSys publications

Information is retrieved from


Back to the index page

Group Leader:
Miguel A. Peinado9 Publications.


Quantification of Unmethylated Alu (QUAlu): a tool to assess global hypomethylation in routine clinical samples.

Oncotarget 2016 Feb 7;

Buj R, Mallona I, Díez-Villanueva A, Barrera V, Mauricio D, Puig-Domingo M, Reverter JL, Matias-Guiu X, Azuara D, Ramírez JL, Alonso S, Rosell R, Capellà G, Perucho M, Robledo M, Peinado MA, Jordà M

View on PubMed

A knowledgebase of the human Alu repetitive elements.

J Biomed Inform 2016 Jan 28;

Mallona I, Jordà M, Peinado MA

View on PubMed


regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests.

Bioinformatics 2015 Sep 30;

Gel B, Díez-Villanueva A, Serra E, Buschbeck M, Peinado MA, Malinverni R

View on PubMed

Wanderer, an interactive viewer to explore DNA methylation and gene expression data in human cancer.

Epigenetics Chromatin 2015;8:22

Díez-Villanueva A, Mallona I, Peinado MA

View on PubMed

Overlapping DNA methylation dynamics in mouse intestinal cell differentiation and early stages of malignant progression.

PLoS One 2015;10(5):e0123263

Forn M, Díez-Villanueva A, Merlos-Suárez A, Muñoz M, Lois S, Carriò E, Jordà M, Bigas A, Batlle E, Peinado MA

View on PubMed

Deconstruction of DNA methylation patterns during myogenesis reveals specific epigenetic events in the establishment of the skeletal muscle lineage.

Stem Cells 2015 Mar 19;

Carrió E, Díez-Villanueva A, Lois S, Mallona I, Cases I, Forn M, Peinado MA, Suelves M

View on PubMed


Methylation plotter: a web tool for dynamic visualization of DNA methylation data.

Source Code Biol Med 2014;9:11

Mallona I, Díez-Villanueva A, Peinado MA

View on PubMed

DNA methylation profiling of well-differentiated thyroid cancer uncovers markers of recurrence free survival.

Int J Cancer 2013 Dec 31;

Mancikova V, Buj R, Castelblanco E, Inglada-Pérez L, Diez A, de Cubas AA, Curras-Freixes M, Maravall FX, Mauricio D, Matias-Guiu X, Puig-Domingo M, Capel I, Bella MR, Lerma E, Castella E, Reverter JL, Peinado MA, Jorda M, Robledo M

View on PubMed


Long range epigenetic silencing is a trans-species mechanism that results in cancer specific deregulation by overriding the chromatin domains of normal cells.

Mol Oncol 2013 Aug 30;

Forn M, Muñoz M, Tauriello DV, Merlos-Suárez A, Rodilla V, Bigas A, Batlle E, Jordà M, Peinado MA

View on PubMed

Latest publications


The Histone Acetyltransferase Mst2 Protects Active Chromatin from Epigenetic Silencing by Acetylating the Ubiquitin Ligase Brl1.

Read more

Proliferation Drives Aging-Related Functional Decline in a Subpopulation of the Hematopoietic Stem Cell Compartment.

Read more

The impact of rare and low-frequency genetic variants in common disease.

Read more