Advancing Epigenetics Towards Systems Biology

List of EpiGeneSys publications

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Group Leader:
Mattia Pelizzola11 Publications.


Ontology-based annotations and semantic relations in large-scale (epi)genomics data.

Brief Bioinform 2016 May 3;

Galeota E, Pelizzola M

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LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer.

BMC Bioinformatics 2016 Feb 9;17(1):80

Melloni GE, de Pretis S, Riva L, Pelizzola M, Céol A, Costanza J, Müller H, Zammataro L

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Degradation dynamics of microRNAs revealed by a novel pulse-chase approach.

Genome Res 2016 Jan 28;

Marzi MJ, Ghini F, Cerruti B, de Pretis S, Bonetti P, Giacomelli C, Gorski MG, Kress T, Pelizzola M, Muller H, Amati B, Nicassio F

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Transcription of Mammalian cis-Regulatory Elements Is Restrained by Actively Enforced Early Termination.

Mol Cell 2015 Nov 5;60(3):460-74

Austenaa LM, Barozzi I, Simonatto M, Masella S, Della Chiara G, Ghisletti S, Curina A, de Wit E, Bouwman BA, de Pretis S, Piccolo V, Termanini A, Prosperini E, Pelizzola M, de Laat W, Natoli G

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Computational epigenomics: challenges and opportunities.

Front Genet 2015;6:88

Robinson MD, Pelizzola M

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DOTS-Finder: a comprehensive tool for assessing driver genes in cancer genomes.

Genome Med 2014;6(6):44

Melloni GE, Ogier AG, de Pretis S, Mazzarella L, Pelizzola M, Pelicci PG, Riva L

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Computational and experimental methods to decipher the epigenetic code.

Front Genet 2014;5:335

de Pretis S, Pelizzola M

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Selective transcriptional regulation by Myc in cellular growth control and lymphomagenesis.

Nature 2014 Jul 24;511(7510):488-92

Sabò A, Kress TR, Pelizzola M, de Pretis S, Gorski MM, Tesi A, Morelli MJ, Bora P, Doni M, Verrecchia A, Tonelli C, Fagà G, Bianchi V, Ronchi A, Low D, Müller H, Guccione E, Campaner S, Amati B

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Relationship between genome and epigenome - challenges and requirements for future research.

BMC Genomics 2014 Jun 18;15(1):487

Almouzni G, Altucci L, Amati B, Ashley N, Baulcombe D, Beaujean N, Bock C, Bongcam-Rudloff E, Bousquet J, Braun S, Paillerets BB, Bussemakers M, Clarke L, Conesa A, Estivill X, Fazeli A, Grgurević N, Gut I, Heijmans BT, Hermouet S, Houwing-Duistermaat J, Iacobucci I, Ilaš J, Kandimalla R, Krauss-Etschmann S, Lasko P, Lehmann S, Lindroth A, Majdič G, Marcotte E, Martinelli G, Martinet N, Meyer E, Miceli C, Mills K, Moreno-Villanueva M, Morvan G, Nickel D, Niesler B, Nowacki M, Nowak J, Ossowski S, Pelizzola M, Pochet R, Potočnik U, Radwanska M, Raes J, Rattray M, Robinson MD, Roelen B, Sauer S, Schinzer D, Slagboom E, Spector T, Stunnenberg HG, Tiligada E, Torres-Padilla ME, Tsonaka R, Soom AV, Vidaković M, Widschwendter M

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Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells.

Genome Res 2013 Dec 13;

Looney T, Lee JH, Zhang L, Chen CH, Chari S, Mao FF, Pelizzola M, Zhang L, Lister R, Baker S, Fernandes C, Gaetz J, Foshay K, Clift K, Zhang Z, Li WQ, Vallender E, Wagner U, Qin JY, Michelini K, Bugarija B, Park D, Aryee E, Stricker T, White K, Ren B, Schroth G, Ecker J, Xiang AP, Zhou J, Lahn B

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Latest publications


The Histone Acetyltransferase Mst2 Protects Active Chromatin from Epigenetic Silencing by Acetylating the Ubiquitin Ligase Brl1.

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Proliferation Drives Aging-Related Functional Decline in a Subpopulation of the Hematopoietic Stem Cell Compartment.

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The impact of rare and low-frequency genetic variants in common disease.

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