Advancing Epigenetics Towards Systems Biology

List of EpiGeneSys publications


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Group Leader:
Eduardo Eyras21 Publications.

2016

Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing.

Proc Natl Acad Sci U S A 2016 Mar 8;

Falaleeva M, Pages A, Matuszek Z, Hidmi S, Agranat-Tamir L, Korotkov K, Nevo Y, Eyras E, Sperling R, Stamm S

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2015

A Quantitative Profiling Tool for Diverse Genomic Data Types Reveals Potential Associations between Chromatin and Pre-mRNA Processing.

PLoS One 2015;10(7):e0132448

Kremsky I, Bellora N, Eyras E

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Leveraging transcript quantification for fast computation of alternative splicing profiles.

RNA 2015 Sep;21(9):1521-31

Alamancos GP, Pagès A, Trincado JL, Bellora N, Eyras E

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A semi-supervised approach uncovers thousands of intragenic enhancers differentially activated in human cells.

BMC Genomics 2015 Jul 14;16:523

González-Vallinas J, Pagès A, Singh B, Eyras E

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AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.

New Phytol 2015 Oct;208(1):96-101

Zhang R, Calixto CP, Tzioutziou NA, James AB, Simpson CG, Guo W, Marquez Y, Kalyna M, Patro R, Eyras E, Barta A, Nimmo HG, Brown JW

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A chromatin code for alternative splicing involving a putative association between CTCF and HP1α proteins.

BMC Biol 2015 May 2;13:31

Agirre E, Bellora N, Alló M, Pagès A, Bertucci P, Kornblihtt AR, Eyras E

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The BioMart community portal: an innovative alternative to large, centralized data repositories.

Nucleic Acids Res 2015 Apr 20;

Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, Arnaiz O, Awedh MH, Baldock R, Barbiera G, Bardou P, Beck T, Blake A, Bonierbale M, Brookes AJ, Bucci G, Buetti I, Burge S, Cabau C, Carlson JW, Chelala C, Chrysostomou C, Cittaro D, Collin O, Cordova R, Cutts RJ, Dassi E, Genova AD, Djari A, Esposito A, Estrella H, Eyras E, Fernandez-Banet J, Forbes S, Free RC, Fujisawa T, Gadaleta E, Garcia-Manteiga JM, Goodstein D, Gray K, Guerra-Assunção JA, Haggarty B, Han DJ, Han BW, Harris T, Harshbarger J, Hastings RK, Hayes RD, Hoede C, Hu S, Hu ZL, Hutchins L, Kan Z, Kawaji H, Keliet A, Kerhornou A, Kim S, Kinsella R, Klopp C, Kong L, Lawson D, Lazarevic D, Lee JH, Letellier T, Li CY, Lio P, Liu CJ, Luo J, Maass A, Mariette J, Maurel T, Merella S, Mohamed AM, Moreews F, Nabihoudine I, Ndegwa N, Noirot C, Perez-Llamas C, Primig M, Quattrone A, Quesneville H, Rambaldi D, Reecy J, Riba M, Rosanoff S, Saddiq AA, Salas E, Sallou O, Shepherd R, Simon R, Sperling L, Spooner W, Staines DM, Steinbach D, Stone K, Stupka E, Teague JW, Dayem Ullah AZ, Wang J, Ware D, Wong-Erasmus M, Youens-Clark K, Zadissa A, Zhang SJ, Kasprzyk A

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Nuclear matrix protein Matrin3 regulates alternative splicing and forms overlapping regulatory networks with PTB.

EMBO J 2015 Jan 19;

Coelho MB, Attig J, Bellora N, König J, Hallegger M, Kayikci M, Eyras E, Ule J, Smith CW

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Detection of recurrent alternative splicing switches in tumor samples reveals novel signatures of cancer.

Nucleic Acids Res 2015 Jan 10;

Sebestyén E, Zawisza M, Eyras E

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2014

Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells.

Proc Natl Acad Sci U S A 2014 Oct 13;

Alló M, Agirre E, Bessonov S, Bertucci P, Gómez Acuña L, Buggiano V, Bellora N, Singh B, Petrillo E, Blaustein M, Miñana B, Dujardin G, Pozzi B, Pelisch F, Bechara E, Agafonov DE, Srebrow A, Lührmann R, Valcárcel J, Eyras E, Kornblihtt AR

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Latest publications

2017-06-27

The Histone Acetyltransferase Mst2 Protects Active Chromatin from Epigenetic Silencing by Acetylating the Ubiquitin Ligase Brl1.

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2017-05-26

Proliferation Drives Aging-Related Functional Decline in a Subpopulation of the Hematopoietic Stem Cell Compartment.

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2017-04-30

The impact of rare and low-frequency genetic variants in common disease.

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